ntRoot: Scalable Ancestry Predictions from Genome Sequencing Data
ntRoot: Scalable Ancestry Predictions from Genome Sequencing Data
We present ntRoot, an alignment-free and computationally lightweight framework for inferring human super-population-level global and local ancestry from whole genome assemblies or raw sequencing data types, and demonstrate its utility on over 300, Simon Genome Diversity Project and 1000 Genomes Project datasets. ntRoot is available from https://github.com/bcgsc/ntRoot. A preprint describing the technology is accessible at https://doi.org/10.1101/2024.03.26.586646
whole genome assembly, 1000 Genomes Project, Variant detection, Simons Genome Diversity Project, ntRoot, local ancestry inference, ntEdit, global ancestry inference, Bloom filters, ancestry prediction, SNV profiling, whole genome shotgun sequencing, sequence alignment-free
whole genome assembly, 1000 Genomes Project, Variant detection, Simons Genome Diversity Project, ntRoot, local ancestry inference, ntEdit, global ancestry inference, Bloom filters, ancestry prediction, SNV profiling, whole genome shotgun sequencing, sequence alignment-free
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