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Data and Analysis Scripts for Diversity-Stability Relationship in Great Barrier Reef Fish Communities

Authors: Tsai, Cheng-Han;

Data and Analysis Scripts for Diversity-Stability Relationship in Great Barrier Reef Fish Communities

Abstract

#### README Summary #### Data StructureThe `dsrltmp2024_meta.RData` file includes essential data for analyzing the diversity-stability relationship in fish communities across 39 Great Barrier Reef sites. Major R objects include: 1. **`ecol.table.new`**: Data frame with variables like species richness, evenness, environmental factors, and stability metrics.2. **`poilog.mle.out`**: List with parameter estimates from bivariate Poisson-lognormal fits.3. **`gbrfishes`**: Species-by-time community matrices for each reef.4. **`ltmp_reefnames`**: Reef IDs.5. **`ltmp_reportyears`**: Reported years.6. **`ltmp_transectlarge_sprowindex`**: Species index for large transects. #### R Code TemplatesThe `MASTER_LTMPDSR.R` script guides using these R objects and other scripts for statistical analyses, including pSEMs and community stability decomposition, as well as handle subsampling, fitting Poisson-lognormal models, and estimating community dynamic parameters. #### Data Availability and AcknowledgmentUsers should acknowledge the Australian Institute of Marine Science Long-Term Monitoring Program and cite relevant sources when using the data or scripts.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average