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image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao ZENODOarrow_drop_down
image/svg+xml Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao Closed Access logo, derived from PLoS Open Access logo. This version with transparent background. http://commons.wikimedia.org/wiki/File:Closed_Access_logo_transparent.svg Jakob Voss, based on art designer at PLoS, modified by Wikipedia users Nina and Beao
ZENODO
Software . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
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Data and Scripts for 'Optimizing Protein–Ligand Docking Through Machine Learning: Algorithm Selection with AutoDock Vina

Authors: Zayed, Ala';

Data and Scripts for 'Optimizing Protein–Ligand Docking Through Machine Learning: Algorithm Selection with AutoDock Vina

Abstract

The data and scripts supporting this study include multioutput_rf_docking_performance.py, which handles multi-output Random Forest regression for docking score evaluation, and feature_performance_crossval.py, which assesses feature sets via cross-validation and ranks them by Mean Squared Error (MSE). feature_performance_gini_importance.py computes Gini importance and filters features, while multi_model_regression_performance.py compares various regression models (Ridge, Lasso, RandomForest, GradientBoosting, and XGBoost) on docking scores. Additional scripts, such as top_54_fingerprint_features.py and top_9_descriptor_features.py, identify the most important features from descriptors and fingerprints, combining top features for comprehensive analysis. Results are saved in Excel files for reproducibility. For more information, see the ReadMe file..

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average