Grass Phylogeny Working Group III: data repository
Grass Phylogeny Working Group III: data repository
Phylogenetic analyses of the grass family (Poaceae) using nuclear and plastid data. The data set includes 1153 accessions corresponding to 1133 accepted species. Genomic data was obtained from different sources including target capture, shotgun, transcriptomes and annotated genomes. Nuclear markers (Angiosperm353 gene set) were assembled from short read data using HybPiper or a custom assembly pipeline optimized for low coverage shotgun data. Plastid genes were either retrieved from published plastome sequences or assembled here using getOrganelle. This data set also includes the results for a gene tree-species tree reconciliation analysis using GeneRax.
- UNSW Sydney Australia
- University of Georgia Georgia
- Southeast University China (People's Republic of)
- Mahidol University Thailand
- California State University, Long Beach United States
nuclear genome, grasses, target capture, Phylogenomics, Angiosperms353, Poaceae, plastome
nuclear genome, grasses, target capture, Phylogenomics, Angiosperms353, Poaceae, plastome
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