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wfmash: whole-chromosome pairwise alignment using the hierarchical wavefront algorithm

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 09 Sep 2021Publisher:Zenodo
Authors: Guarracino, Andrea; Mwaniki, Njagi; Marco-Sola, Santiago; Garrison, Erik;

doi: 10.5281/zenodo.13342620 , 10.5281/zenodo.16538289 , 10.5281/zenodo.6949372 , 10.5281/zenodo.11969081 , 10.5281/zenodo.10562737 , 10.5281/zenodo.10621250 , 10.5281/zenodo.13629309 , 10.5281/zenodo.8207753 , 10.5281/zenodo.10560088 , 10.5281/zenodo.8085970 , 10.5281/zenodo.7535457 , 10.5281/zenodo.12788512 , 10.5281/zenodo.14977118 , 10.5281/zenodo.11093439 , 10.5281/zenodo.7452555 , 10.5281/zenodo.15213198 , 10.5281/zenodo.13376491 , 10.5281/zenodo.7846228 , 10.5281/zenodo.10864529 , 10.5281/zenodo.11390662 , 10.5281/zenodo.7258697 , 10.5281/zenodo.12622662 , 10.5281/zenodo.13225017 , 10.5281/zenodo.16577075 , 10.5281/zenodo.18435623

wfmash: whole-chromosome pairwise alignment using the hierarchical wavefront algorithm

Abstract

wfmash, a new gap-affine pairwise aligner designed to align DNA sequences at a whole-chromosome scale. wfmash applies a hierarchical implementation of the wavefront alignment algorithm to guide the alignment of very long sequences. It scales efficiently to large eukaryotic chromosomes, allowing users to perform pairwise alignment of thousands of large genomes using little time and memory.

If you use this software, please cite it as below.

Keywords

pangenome, sequence alignment, pairwise alignment

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selected citations
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BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
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BIP!Influence provided by BIP!
impulse
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