Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2024
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
versions View all 3 versions
addClaim

GO-List(groups)_TO_GO-Table

Authors: Danzmann, Roy;

GO-List(groups)_TO_GO-Table

Abstract

This software executable is a simple sorting program that allows the user to append together the output data files from Gene Ontology (GO) counting programs that assign genes and their associated GO terms into hierarchical groupings (i.e., GO-slim categories). Gene lists in a two column tab-delimited format (i.e., gene name with associated GO term) may be entered into software platforms such as the GO Slim Viewer (https://agbase.arizona.edu/cgi-bin/tools/goslimviewer_select.pl), or the ‘Terms Classification Counter’ (https://www.animalgenome.org/cgi-bin/util/gotreei). Depending upon the GO-slim analyzer chosen the program will return GO slim terms and their associated counts that fall into one of three GO hierarchies (i.e., Biological Process (BP), Cellular Component (CC), or Molecular Function (MF)). If the user is analyzing the data from multiple experiments, the gene lists may be appended together into a new file and entered into this program. The program will sort the data into a tabular format across all the GO terms identified among all the appended file datasets. This makes the output suitable to select and copy given columns of data into another file that may be used as input for the backward elimination ‘Heterogeneity G-test’ program (doi.org/10.5281/zenodo.13133983). This program tests for significant pairwise differences in counts among the different GO parent terms being analyzed. Additional information how to use the program is provided in the accompanying WORD NOTES or NOTES.pdf documents.

Related Organizations
  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average