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Supplementary data: ONT for Listeria monocytogenes outbreak detection

Name: Supplementary data: ONT for Listeria monocytogenes outbreak detection
Creator: Biggel, Michael

Research datakeyboard_double_arrow_right Dataset 27 Aug 2024Publisher:Zenodo

Authors: Biggel, Michael;

doi: 10.5281/zenodo.13380265 , 10.5281/zenodo.13380264

Supplementary data: ONT for Listeria monocytogenes outbreak detection

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Abstract

Supplementary data for the publication "Oxford Nanopore’s 2024 sequencing technology for Listeria monocytogenes outbreak detection and source attribution: progress and clone-specific challenges" L. monocytogenes assemblies generated from Illumina-only data (shovill) ONT-only data (100x coverage, sup@v5.0 + flye + flye polisher + medaka [model r103_min_high_g360]) ONT + Illumina data (100x ONT coverage, sup@v5.0 + flye + flye polisher + polypolish) Raw ONT pod5 data from three L. monocytogenes isolates (N19-1094, N21-2956, N23-1883) with GAAG6mAC / GT4mCTTC methylations, among other methylated motifs

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University of Zurich
Switzerland

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