Example Dataset for npstat: Population genetics from Pooled NGS data NPStat v1: User guide

Example Dataset for npstat to test the program and the different options. The example dataset contains a pileup file with sequences of of the 2L chromosome from fifteen pooled inbreed individuals of Drosophila melanogaster (doi: 10.1038/nature10811). The dataset also contains the sequence reference of the 2L chromosome in fasta format, an outgroup sequence in fasta format of D. yakuba (SRR26246471), a GFF3 annotation file and a file with a brief list of selected SNPs to be analyzed.

Related Organizations

Center for Research in Agricultural Genomics
Spain
University of Barcelona
Spain

Keywords

FOS: Biological sciences, Genetics

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