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Graph-based Nanopore Adaptive Sampling Typing (GNASTy)

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 29 Jan 2024Publisher:Zenodo
Authors: Horsfield, Samuel;

doi: 10.5281/zenodo.12518845 , 10.5281/zenodo.10581131 , 10.5281/zenodo.13358697 , 10.5281/zenodo.10581132

Graph-based Nanopore Adaptive Sampling Typing (GNASTy)

Abstract

Scripts for a Graph-based Nanopore Adaptive Sampling tool, known as 'GNASTy' (Graph Nanopore Adaptive Sampling Typing, pronounced 'nasty'), which is a modification of Readfish. This repository contains code from the original Readfish tool from Payne et al. 2021 (available here: https://github.com/LooseLab/readfish, publication: https://www.nature.com/articles/s41587-020-00746-x). If you use this software, please cite the original Readfish paper.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
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