Fixed error with fraction of infectious virus (f_inf) (short-range). Default form values: NO_DEFAULT = object() DEFAULTS = { 'activity_type': 'office', 'air_changes': 0., 'air_supply': 0., 'arve_sensors_option': False, 'specific_breaks': '{}', 'precise_activity': '{}', 'calculator_version': NO_DEFAULT, 'ceiling_height': 0., 'conditional_probability_plot': False, 'conditional_probability_viral_loads': False, 'CO2_fitting_result': '{}', 'exposed_coffee_break_option': 'coffee_break_0', 'exposed_coffee_duration': 5, 'exposed_finish': '17:30', 'exposed_lunch_finish': '13:30', 'exposed_lunch_option': True, 'exposed_lunch_start': '12:30', 'exposed_start': '08:30', 'event_month': 'January', 'floor_area': 0., 'hepa_amount': 0., 'hepa_option': False, 'humidity': '', 'infected_coffee_break_option': 'coffee_break_0', 'infected_coffee_duration': 5, 'infected_dont_have_breaks_with_exposed': False, 'infected_finish': '17:30', 'infected_lunch_finish': '13:30', 'infected_lunch_option': True, 'infected_lunch_start': '12:30', 'infected_people': 1, 'infected_start': '08:30', 'inside_temp': NO_DEFAULT, 'location_latitude': NO_DEFAULT, 'location_longitude': NO_DEFAULT, 'location_name': NO_DEFAULT, 'geographic_population': 0, 'geographic_cases': 0, 'ascertainment_bias': 'confidence_low', 'exposure_option': 'p_deterministic_exposure', 'mask_type': 'Type I', 'mask_wearing_option': 'mask_off', 'mechanical_ventilation_type': 'not-applicable', 'opening_distance': 0., 'room_heating_option': False, 'room_number': NO_DEFAULT, 'room_volume': 0., 'simulation_name': NO_DEFAULT, 'total_people': NO_DEFAULT, 'vaccine_option': False, 'vaccine_booster_option': False, 'vaccine_type': 'AZD1222_(AstraZeneca)', 'vaccine_booster_type': 'AZD1222_(AstraZeneca)', 'ventilation_type': 'no_ventilation', 'virus_type': 'SARS_CoV_2', 'volume_type': NO_DEFAULT, 'window_type': 'window_sliding', 'window_height': 0., 'window_width': 0., 'windows_duration': 10., 'windows_frequency': 60., 'windows_number': 0, 'window_opening_regime': 'windows_open_permanently', 'sensor_in_use': '', 'short_range_option': 'short_range_no', 'short_range_interactions': '[]', 'short_range_occupants': 0, } # ------------------ Activities ---------------------- # ------------------ Validation ---------------------- COFFEE_OPTIONS_INT = {'coffee_break_0': 0, 'coffee_break_1': 1, 'coffee_break_2': 2, 'coffee_break_4': 4} CONFIDENCE_LEVEL_OPTIONS = {'confidence_low': 10, 'confidence_medium': 5, 'confidence_high': 2} MECHANICAL_VENTILATION_TYPES = { 'mech_type_air_changes', 'mech_type_air_supply', 'not-applicable'} MASK_WEARING_OPTIONS = {'mask_on', 'mask_off'} MONTH_NAMES = [ 'January', 'February', 'March', 'April', 'May', 'June', 'July', 'August', 'September', 'October', 'November', 'December', ] VACCINE_BOOSTER_TYPE = ['AZD1222_(AstraZeneca)', 'Ad26.COV2.S_(Janssen)', 'BNT162b2_(Pfizer)', 'BNT162b2_(Pfizer)_(4th_dose)', 'BNT162b2_(Pfizer)_and_mRNA-1273_(Moderna)', 'BNT162b2_(Pfizer)_or_mRNA-1273_(Moderna)', 'BNT162b2_(Pfizer)_or_mRNA-1273_(Moderna)_(4th_dose)', 'CoronaVac_(Sinovac)', 'Coronavac_(Sinovac)', 'Sinopharm', 'mRNA-1273_(Moderna)', 'mRNA-1273_(Moderna)_(4th_dose)', 'Other'] VACCINE_TYPE = ['Ad26.COV2.S_(Janssen)', 'Any_mRNA_-_heterologous', 'AZD1222_(AstraZeneca)', 'AZD1222_(AstraZeneca)_and_any_mRNA_-_heterologous', 'AZD1222_(AstraZeneca)_and_BNT162b2_(Pfizer)', 'BBIBP-CorV_(Beijing_CNBG)', 'BNT162b2_(Pfizer)', 'BNT162b2_(Pfizer)_and_mRNA-1273_(Moderna)', 'CoronaVac_(Sinovac)', 'CoronaVac_(Sinovac)_and_AZD1222_(AstraZeneca)', 'Covishield', 'mRNA-1273_(Moderna)', 'Sputnik_V_(Gamaleya)', 'CoronaVac_(Sinovac)_and_BNT162b2_(Pfizer)'] VENTILATION_TYPES = {'natural_ventilation', 'mechanical_ventilation', 'no_ventilation', 'from_fitting'} VOLUME_TYPES = {'room_volume_explicit', 'room_volume_from_dimensions'} WINDOWS_OPENING_REGIMES = {'windows_open_permanently', 'windows_open_periodically', 'not-applicable'} WINDOWS_TYPES = {'window_sliding', 'window_hinged', 'not-applicable'} Configuration: version = None expiration_particle = { "long_range_particle_diameter": { "minimum_diameter": 0.1, "maximum_diameter": 30, "references": "Morawska et al. (https://doi.org/10.1016/j.jaerosci.2008.11.002); Johnson et al. (https://doi.org/10.1016/j.jaerosci.2011.07.009).", }, "short_range_particle_diameter": { "minimum_diameter": 0.1, "maximum_diameter": 100, "references": "Morawska et al. (https://doi.org/10.1016/j.jaerosci.2008.11.002); Johnson et al. (https://doi.org/10.1016/j.jaerosci.2011.07.009).", }, "BLOmodel": { "cn": {"B": 0.06, "L": 0.2, "O": 0.0010008}, "mu": {"B": 0.989541, "L": 1.38629, "O": 4.97673}, "sigma": {"B": 0.262364, "L": 0.506818, "O": 0.585005}, "references": "Morawska et al. (https://doi.org/10.1016/j.jaerosci.2008.11.002); Johnson et al. (https://doi.org/10.1016/j.jaerosci.2011.07.009).", }, "expiration_BLO_factors": { "Breathing": {"B": 1., "L": 0., "O": 0., }, "Speaking": {"B": 1., "L": 1., "O": 1., }, "Singing": {"B": 1., "L": 5., "O": 5., }, "Shouting": {"B": 1., "L": 5., "O": 5., }, "references": "Morawska et al. (https://doi.org/10.1016/j.jaerosci.2008.11.002); Johnson et al. (https://doi.org/10.1016/j.jaerosci.2011.07.009).", }, "particle": { "evaporation_factor": 0.3, "references": "Marr et al. (https://doi.org/10.1098/rsif.2018.0298).", }, } activity_distributions = { "Seated": { "inhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": -0.6872121723362303, "lognormal_standard_deviation_gaussian": 0.10498338229297108, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "exhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": -0.6872121723362303, "lognormal_standard_deviation_gaussian": 0.10498338229297108, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, }, "Standing": { "inhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": -0.5742377578494785, "lognormal_standard_deviation_gaussian": 0.09373162411398223, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "exhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": -0.5742377578494785, "lognormal_standard_deviation_gaussian": 0.09373162411398223, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, }, "Light activity": { "inhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": 0.21380242785625422, "lognormal_standard_deviation_gaussian": 0.09435378091059601, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "exhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": 0.21380242785625422, "lognormal_standard_deviation_gaussian": 0.09435378091059601, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, }, "Moderate activity": { "inhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": 0.551771330362601, "lognormal_standard_deviation_gaussian": 0.1894616357138137, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "exhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": 0.551771330362601, "lognormal_standard_deviation_gaussian": 0.1894616357138137, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, }, "Heavy exercise": { "inhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": 1.1644665696723049, "lognormal_standard_deviation_gaussian": 0.21744554768657565, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "exhalation_rate": { "associated_value": "Log-normal distribution", "parameters": { "lognormal_mean_gaussian": 1.1644665696723049, "lognormal_standard_deviation_gaussian": 0.21744554768657565, }, "references": "Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, }, } virological_data = { "symptomatic_vl_frequencies": { "associated_value": "Log Custom Kernel distribution", "parameters": { "log_variable": [ 2.46032, 2.67431, 2.85434, 3.06155, 3.25856, 3.47256, 3.66957, 3.85979, 4.09927, 4.27081, 4.47631, 4.66653, 4.87204, 5.10302, 5.27456, 5.46478, 5.6533, 5.88428, 6.07281, 6.30549, 6.48552, 6.64856, 6.85407, 7.10373, 7.30075, 7.47229, 7.66081, 7.85782, 8.05653, 8.27053, 8.48453, 8.65607, 8.90573, 9.06878, 9.27429, 9.473, 9.66152, 9.87552, ], "frequencies": [ 0.001206885, 0.007851618, 0.008078144, 0.01502491, 0.013258014, 0.018528495, 0.020053765, 0.021896167, 0.022047184, 0.018604005, 0.01547796, 0.018075445, 0.021503523, 0.022349217, 0.025097721, 0.032875078, 0.030594727, 0.032573045, 0.034717482, 0.034792991, 0.033267721, 0.042887485, 0.036846816, 0.03876473, 0.045016819, 0.040063473, 0.04883754, 0.043944602, 0.048142864, 0.041588741, 0.048762031, 0.027921732, 0.033871788, 0.022122693, 0.016927718, 0.008833228, 0.00478598, 0.002807662, ], "kernel_bandwidth": 0.1, }, "references": "Henriques et al. (https://doi.org/10.1101/2021.10.14.21264988) and references therein.", }, "covid_overal_vl_data": { "associated_value": "Weibull distribution", "parameters": { "shape_factor": 3.47, "scale_factor": 7.01, "start": 0.01, "stop": 0.99, "num": 30.0, "min_bound": 2, "max_bound": 10, "interpolation_fp_left": 0, "interpolation_fp_right": 0, "max_function": 0.2, }, "references": "Chen et al. (https://elifesciences.org/articles/65774); First line of the figure in https://iiif.elifesciences.org/lax:65774%2Felife-65774-fig4-figsupp3-v2.tif/full/1500,/0/default.jpg.", }, "virus_distributions": { "SARS_CoV_2": { "viral_load_in_sputum": ViralLoads.COVID_OVERALL.value, "infectious_dose": { "associated_value": "Uniform distribution", "parameters": {"low": 10, "high": 100}, "references": "Lednicky et al. (https://doi.org/10.1016/j.ijid.2020.09.025); Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "viable_to_RNA_ratio": { "associated_value": "Uniform distribution", "parameters": {"low": 0.01, "high": 0.6}, "references": "", }, "transmissibility_factor": { "value": 1, "references": "Campbell et al. (https://doi.org/10.2807/1560-7917.ES.2021.26.24.2100509.)", }, "infectiousness_days": { "value": 14, "references": "", }, }, "SARS_CoV_2_ALPHA": { "viral_load_in_sputum": ViralLoads.COVID_OVERALL.value, "infectious_dose": { "associated_value": "Uniform distribution", "parameters": {"low": 10, "high": 100}, "references": "Lednicky et al. (https://doi.org/10.1016/j.ijid.2020.09.025); Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "viable_to_RNA_ratio": { "associated_value": "Uniform distribution", "parameters": {"low": 0.01, "high": 0.6}, "references": "", }, "transmissibility_factor": { "value": 0.78, "references": "Campbell et al. (https://doi.org/10.2807/1560-7917.ES.2021.26.24.2100509.)", }, "infectiousness_days": { "value": 14, "references": "", }, }, "SARS_CoV_2_BETA": { "viral_load_in_sputum": ViralLoads.COVID_OVERALL.value, "infectious_dose": { "associated_value": "Uniform distribution", "parameters": {"low": 10, "high": 100}, "references": "Lednicky et al. (https://doi.org/10.1016/j.ijid.2020.09.025); Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "viable_to_RNA_ratio": { "associated_value": "Uniform distribution", "parameters": {"low": 0.01, "high": 0.6}, "references": "", }, "transmissibility_factor": { "value": 0.8, "references": "Campbell et al. (https://doi.org/10.2807/1560-7917.ES.2021.26.24.2100509.)", }, "infectiousness_days": { "value": 14, "references": "", }, }, "SARS_CoV_2_GAMMA": { "viral_load_in_sputum": ViralLoads.COVID_OVERALL.value, "infectious_dose": { "associated_value": "Uniform distribution", "parameters": {"low": 10, "high": 100}, "references": "Lednicky et al. (https://doi.org/10.1016/j.ijid.2020.09.025); Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "viable_to_RNA_ratio": { "associated_value": "Uniform distribution", "parameters": {"low": 0.01, "high": 0.6}, "references": "", }, "transmissibility_factor": { "value": 0.72, "references": "Campbell et al. (https://doi.org/10.2807/1560-7917.ES.2021.26.24.2100509.)", }, "infectiousness_days": { "value": 14, "references": "", }, }, "SARS_CoV_2_DELTA": { "viral_load_in_sputum": ViralLoads.COVID_OVERALL.value, "infectious_dose": { "associated_value": "Uniform distribution", "parameters": {"low": 10, "high": 100}, "references": "Lednicky et al. (https://doi.org/10.1016/j.ijid.2020.09.025); Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "viable_to_RNA_ratio": { "associated_value": "Uniform distribution", "parameters": {"low": 0.01, "high": 0.6}, "references": "", }, "transmissibility_factor": { "value": 0.51, "references": "Campbell et al. (https://doi.org/10.2807/1560-7917.ES.2021.26.24.2100509.)", }, "infectiousness_days": { "value": 14, "references": "", }, }, "SARS_CoV_2_OMICRON": { "viral_load_in_sputum": ViralLoads.COVID_OVERALL.value, "infectious_dose": { "associated_value": "Uniform distribution", "parameters": {"low": 10, "high": 100}, "references": "Lednicky et al. (https://doi.org/10.1016/j.ijid.2020.09.025); Henriques et al. (https://doi.org/10.1098/rsfs.2021.0076) and references therein.", }, "viable_to_RNA_ratio": { "associated_value": "Uniform distribution", "parameters": {"low": 0.01, "high": 0.6}, "references": "", }, "transmissibility_factor": { "value": 0.2, "references": "", }, "infectiousness_days": { "value": 14, "references": "", }, }, }, } mask_distributions = { "Type I": { "η_inhale": { "associated_value": "Uniform distribution", "parameters": { "low": 0.25, "high": 0.80, }, "references": "Pan et al. (https://doi.org/10.1080/02786826.2021.1890687); Booth et al. (https://doi.org/10.1016/j.jhin.2013.02.007); Monn et al. (https://doi.org/10.4209/aaqr.2020.08.0531).", }, "factor_exhale": { "value": 1, "references": "", }, }, "FFP2": { "η_inhale": { "associated_value": "Uniform distribution", "parameters": { "low": 0.83, "high": 0.91, }, "references": "Pan et al. (https://doi.org/10.1080/02786826.2021.1890687); Booth et al. (https://doi.org/10.1016/j.jhin.2013.02.007); Monn et al. (https://doi.org/10.4209/aaqr.2020.08.0531).", }, "factor_exhale": { "value": 1, "references": "", }, }, "Cloth": { "η_inhale": { "associated_value": "Uniform distribution", "parameters": { "low": 0.05, "high": 0.40, }, "references": "Pan et al. (https://doi.org/10.1080/02786826.2021.1890687); Booth et al. (https://doi.org/10.1016/j.jhin.2013.02.007); Monn et al. (https://doi.org/10.4209/aaqr.2020.08.0531).", }, "η_exhale": { "associated_value": "Uniform distribution", "parameters": { "low": 0.20, "high": 0.50, }, "references": "Pan et al. (https://doi.org/10.1080/02786826.2021.1890687); Booth et al. (https://doi.org/10.1016/j.jhin.2013.02.007); Monn et al. (https://doi.org/10.4209/aaqr.2020.08.0531).", }, "factor_exhale": { "value": 1, "references": "", }, }, } #################################### room = { "inside_temp": 293., "humidity_with_heating": 0.3, "humidity_without_heating": 0.5, "references": "", } ventilation = { "natural": { "discharge_factor": { "sliding": 0.6, }, }, "infiltration_ventilation": 0.25, "references": "Henriques et al. (https://doi.org/10.1101/2021.10.14.21264988).", } concentration_model = { "virus_concentration_model": { "min_background_concentration": 0.0, "references": "", }, "CO2_concentration_model": { "CO2_atmosphere_concentration": 440.44, "CO2_fraction_exhaled": 0.042, "references": "", }, } short_range_model = { "dilution_factor": { "mouth_diameter": 0.02, "exhalation_coefficient": 2, "breathing_cycle": 4, "penetration_coefficients": { "𝛽r1": 0.18, "𝛽r2": 0.2, "𝛽x1": 2.4, }, "references": "Jia et al. (https://doi.org/10.1016/j.buildenv.2022.109166).", }, "conversational_distance": { "minimum_distance": 0.5, "maximum_distance": 2.0, "references": "Derived from Fig. 8 a) 'stand-stand' in Zhang et al. (https://www.mdpi.com/1660-4601/17/4/1445).", }, } monte_carlo = { "sample_size": 250000, "references": "", } population_scenario_activity = { "office": {"placeholder": "Office", "activity": "Seated", "expiration": {"Speaking": 1, "Breathing": 2}}, "smallmeeting": { "placeholder": "Small meeting (= 10 occ.)", "activity": "Standing", "expiration": {"Speaking": 1, "Breathing": 2}, }, "callcenter": {"placeholder": "Call Center", "activity": "Seated", "expiration": {"Speaking": 1}}, "controlroom-day": { "placeholder": "Control Room - Day shift", "activity": "Seated", "expiration": {"Speaking": 1, "Breathing": 1}, }, "controlroom-night": { "placeholder": "Control Room - Night shift", "activity": "Seated", "expiration": {"Speaking": 1, "Breathing": 9}, }, "library": {"placeholder": "Library", "activity": "Seated", "expiration": {"Breathing": 1}}, "lab": { "placeholder": "Lab", "activity": "Light activity", "expiration": {"Speaking": 1, "Breathing": 1}, }, "workshop": { "placeholder": "Workshop", "activity": "Moderate activity", "expiration": {"Speaking": 1, "Breathing": 1}, }, "training": {"placeholder": "Conference/Training (speaker infected)", "activity": "Standing", "expiration": {"Speaking": 1}}, "training_attendee": {"placeholder": "Conference/Training (attendee infected)", "activity": "Seated", "expiration": {"Breathing": 1}}, "gym": {"placeholder": "Gym", "activity": "Heavy exercise", "expiration": {"Breathing": 1}}, "household-day": { "placeholder": "Household (day time)", "activity": "Light activity", "expiration": {"Breathing": 5, "Speaking": 5}, }, "household-night": { "placeholder": "Household (evening and night time)", "activity": "Seated", "expiration": {"Breathing": 7, "Speaking": 3}, }, "primary-school": { "placeholder": "Primary school", "activity": "Light activity", "expiration": {"Breathing": 5, "Speaking": 5}, }, "secondary-school": { "placeholder": "Secondary school", "activity": "Light activity", "expiration": {"Breathing": 7, "Speaking": 3}, }, "university": { "placeholder": "University", "activity": "Seated", "expiration": {"Breathing": 9, "Speaking": 1}, }, "restaurant": { "placeholder": "Restaurant", "activity": "Seated", "expiration": {"Breathing": 1, "Speaking": 9}, }, "precise": {"placeholder": "Precise", "activity": "", "expiration": {}}, }