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Software . 2026
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Software . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
ZENODO
Software . 2026
License: CC BY
Data sources: Datacite
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Mapping single cell eQTLs by using MatrixEQTL with pseudo-bulk cell type

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 16 Aug 2024Embargo end date: 12 Aug 2024 English Publisher:Zenodo
Authors: Lin, Zechuan; Weykopf, Beatrice;

doi: 10.5281/zenodo.17611730 , 10.5281/zenodo.13333397 , 10.5281/zenodo.13333396

Mapping single cell eQTLs by using MatrixEQTL with pseudo-bulk cell type

Abstract

These scripts are implementing a two-step approach for detecting eQTL and conditional eQTL analysis for cell type gene expression in single cell RNA seq study. Relevant R packages: SVA (version 3.52.0, DOI: 10.18129/B9.bioc.sva), MatrixEQTL (version 2.1.0, link: https://www.bios.unc.edu/research/genomic_software/Matrix_eQTL/runit.html)optparse (version 1.7.5, for passing parameters from command line, link: https://cran.r-project.org/web/packages/optparse/index.html) Additional information, pls see the README file.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average