Size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis (code and data)

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 19 Dec 2014Publisher:ZenodoFunded by:FCT | DataStorm, FCT | NetDyn: Understanding rea..., EC | TwinnToInfect +1 projects

Authors: Andreia Sofia Teixeira; Pedro T Monteiro; João A Carriço; Mário Ramirez; Alexandre P Francisco;

doi: 10.5281/zenodo.13324

Size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis (code and data)

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Abstract

Code and data used in our study "Not seeing the forest for the trees: Size of the minimum spanning trees (MSTs) forest and branch significance in MST-based phylogenetic analysis". The original development repository is available at https://bitbucket.org/phyloviz/popsim-analysis. MLST datasets included for testing and experiments were retrieved on 2014-06-24 from MLST.net, PubMLST.org and Institute Pasteur, where more recent versions can be found.

Related Organizations

University of Lisbon
Portugal

Keywords

counting minimum spanning trees (MSTs), phylogenetic analysis, edge spanning betweenness, network analysis

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