FASPA - Fast Amplicon Sequence Processing and Analysis

What is FASPA? FASPA is available on GitHub: https://github.com/StefanPfeiffer80/FASPA.github.io FASPA is a workflow for analyzing 16S rRNA gene Illumina paired-end sequence data. FASPA is a collection of shell bash scripts, perl scripts and R scripts and relies on state of the art programs used in sequence processing, USEARCH and VSEARCH. FASPA output files can be directly used for downstream analyses using e.g. the phyloseq package in R, the Rhea script collection, or the QIIME software package. Contact: microbiawesome@gmail.com.

Keywords

Illumina MiSeq paired end sequencing, 16S rRNA gene amplicon sequencing and analysis, USEARCH, VSEARCH, R, microbiome statistics, bacterial community analysis.

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