This record contains the processed high-throughput sequencing data from the manuscript "Bacterial cell surface characterization by phage display coupled to high-throughput sequencing." Data was generated using the Snakemake workflows and Jupyter notebooks in this repository and is intended to be analyzed further using the notebooks in that repository Each tarball within this record, when expanded, populates the results and intermediate directories of one of those workflows: alpaca-library ,panning-small, panning-massive, or panning-extended. Clone the phage-seq repository, then download one or more of these tarballs to the corresponding directory of that directory. For example: git clone https://github.com/caseygrun/phage-seq.git cd panning-extended wget https://zenodo.org/records/11246658/files/panning-extended-results.tar.gz tar vzxf panning-extended-results.tar.gz More detailed instructions are included in the README for the phage-seq repository.