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Data from: A classification-occupancy model based on automatically identified species data

Name: Data from: A classification-occupancy model based on automatically identified species data
Creator: Ogawa, Ryo

descriptionPublicationkeyboard_double_arrow_right Article 23 Jul 2024Publisher:Zenodo

Authors: Ogawa, Ryo;

doi: 10.5281/zenodo.12802534 , 10.5281/zenodo.12802535

Data from: A classification-occupancy model based on automatically identified species data

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Abstract

Data and code repository associated with the publication: Ogawa, Ryo, Frédéric Gosselin, Kevin F. A. Darras, Stephanie Roilo, and Anna F. Cord. 2025. “A Classification-Occupancy Model Based onAutomatically Identified Species Data.” Ecology e70086. https://doi.org/10.1002/ecy.70086 This folder includes the data, codes, and results of manuscript in addition to tutorial material for the proposed model. The Rscripts include both simulation and case study analyses. Some of the data include sensitive information, but the proposed model can be analyzed with the data included in this depository. In addition, all the processed data and result figures can be found from this depository. ## Description of the data and file structurecls_occ/ readme.txt batch/ case_study.txt simulation.txt input/ all_aid.txt amplitude_ambient_manual.csv amplitude_signal_manual.csv annotation.csv species_count.csv species_data.csv Xdet.csv Xocc_ori.csv jagscodes/ model1.txt model2.txt model3.txt model4.txt readme.txt output/ case_study/ detection_space.csv MCMCparams.csv Alauda arvensis/ model1.RData model2.RData model3.RData model4.RData Curruca communis/ model1.RData model2.RData model3.RData model4.RData Emberiza citrinella/ model1.RData model2.RData model3.RData model4.RData model_eval/ Alauda arvensis.csv Curruca communis.csv Emberiza citrinella.csv Motacilla flava.csv Passer montanus.csv Motacilla flava/ model1.RData model2.RData model3.RData model4.RData Passer montanus/ model1.RData model2.RData model3.RData model4.RData simulation/ result_300524.csv result_300524_aggr.csv plot/ Alauda arvensis.jpg confidence_score_correlation.jpg Curruca communis.jpg detection_fp.jpg Emberiza citrinella.jpg model_eval.jpg Motacilla flava.jpg Passer montanus.jpg ppp_chi_m4.jpg ppp_sos_m4.jpg score_histogram.jpg rscript/ 1_simulation.R 2_case_study.R 3_model_eval.R readme.txt utils.R figures/ fig2_model_eval_summary.R figS10_confidence_score_correlation.R figS8_detection_fp.R figS9_score_histogram.R figsS1-S2_ppp_plot.R figsS3-S7_sd_map.R tables/ tab1_simulation_aggr.R tabS4_detection_space.R tabS5_MCMCparams.R tutorial/ cls_occ_tutorial.RData model4.txt

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