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ZENODO
Software . 2024
License: http://opensource.org/licenses/MIT
Data sources: ZENODO
ZENODO
Software . 2024
License: https://opensource.org/licenses/MIT
Data sources: Datacite
ZENODO
Software . 2024
License: https://opensource.org/licenses/MIT
Data sources: Datacite
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CellLevel_QC: Extracting cell level QC metrics from CellRanger barcoded bams

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 22 Jul 2024Publisher:Zenodo
Authors: Simmons, Sean;

doi: 10.5281/zenodo.12794612 , 10.5281/zenodo.12794611

CellLevel_QC: Extracting cell level QC metrics from CellRanger barcoded bams

Abstract

This repository contains java code for a simple command to get cell level mapping information (number of reads that are intronic, intergenic, multimapped, etc) from the output in CellRanger (tested with CellRanger v5 and v6 using the include introns flag, should work with more recent versions as well though no gurantees. Should work on spaceranger output as well, and both single nuc and single cell data).

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average