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ZENODO
Dataset . 2025
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2025
License: CC BY
Data sources: Datacite
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Supplementary data files for manuscript titled "From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research"

Authors: Witt, Gesa; Gadiya, Yojana; Abbassi-Daloii, Tooba; Ioannidis, Vassilios; Juty, Nick; Kallesøe, Claus Stie; Attwood, Marie; +2 Authors

Supplementary data files for manuscript titled "From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research"

Abstract

This data repository contains all the necessary supplementary files for the manuscript titled "From spreadsheet lab data templates to knowledge graphs: A FAIR data journey in the domain of AMR research." The repository is a copy of the GitHub page with the source code used to generate the graph and additional files required for the Lab Data Template. Below we provide a brief overview of the data files in the `additional folder` and their underlying purpose: The Data Survey collects relevant project and data set information to set up a Data Management Plan. It can serve as an input for Lab Data Template development. The Lab Data Templates facilitate the collection of AMR research data (in vivo and in vitro) in several sub-tables. The Excel format is compatible with upload procedures into the data repository 'grit' and serves as input for a knowledge graph workflow. The Data dictionary is connected to the Lab Data Templates and ensures harmonized data entries. In addition, the dictionaries collect metadata beyond the content of the Lab Data Template (e.g. bacterial strain information or compound information) and link to ontologies where possible. The FAIR assessments have been used as a primer for improving the template. This report is generated using the FAIR-DSM model. The templates have been used during the IMI2 GNA NOW project to collect information and have been improved according to FAIR standards in collaboration with the IMI FAIRplus project ("post FAIRification").

Keywords

antimicrobial, AMR, lab data templates, knowledge-graphs, Data Management, FAIR

  • BIP!
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    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average
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