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shenwei356/taxonkit: TaxonKit v0.13.0

Authors: Wei Shen; Antônio Camargo; Mathias Walter;

shenwei356/taxonkit: TaxonKit v0.13.0

Abstract

Changes TaxonKit v0.13.0 taxonkit reformat: add a new placeholder {K} for rank kingdom. #64 do not panic for invalid TaxIds, e.g., the column name, when using -I--taxid-field. taxonkit create-taxdump: fix merged.dmp and delnodes.dmp. Thanks to @apcamargo ! gtdb-taxdump/issues/2. fix bug of handling non-GTDB data when using -A/--field-accession and no rank names given: the colname of the accession column would be treated as one of the ranks, which messed up all the ranks. fix the default option value of --field-accession-re which wrongly remove prefix like Sp_. #65 taxonkit list: fix warning message of merged taxids. ### Please cite Shen, W., Ren, H., TaxonKit: a practical and efficient NCBI Taxonomy toolkit, Journal of Genetics and Genomics, https://doi.org/10.1016/j.jgg.2021.03.006 Links Tips run taxonkit version to check update !!! run taxonkit genautocomplete to update Bash completion !!! OS Arch File, 中国镜像 Download Count Linux 64-bit taxonkit_linux_amd64.tar.gz,<br/> 中国镜像 Linux arm64 taxonkit_linux_arm64.tar.gz,<br/> 中国镜像 macOS 64-bit taxonkit_darwin_amd64.tar.gz,<br/> 中国镜像 macOS arm64 taxonkit_darwin_arm64.tar.gz,<br/> 中国镜像 Windows 64-bit taxonkit_windows_amd64.exe.tar.gz,<br/> 中国镜像

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