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ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
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Annotation data needed for FLAMES

Abstract

Annotation data needed for running FLAMES. All files ending in .tar.gz must be unpacked before using. e.g. using tar -xzvf Annotation_data.tar.gz -C /path/to/extract, where /path/to/extract is the location where you want the files extracted. This page contains the following files: Annotation_data.tar.gz - This gzipped file contains the data needed for the functional annotation of FLAMES. Please extract the data before running FLAMES, gtex_v8_ts_avg_log2TPM.txt - This file can be used for generating the tissue-type specific MAGMA results. For a more detailed explanation see github.com/Marijn-Schipper/FLAMES pops_features_full.tar.gz - This contains the data to recreate PoPS scores as used in the manuscript. pops_features_pathway_naive.tar.gz - This contains the data to recreate pathway naive PoPS scores as used in the manuscript. pops_features_pathway_FUMA_compatible.gz - This contains the data to recreate PoPS scores from MAGMA-Z files from ENSEMBL version 1.03-1.10, or FUMA MAGMA results. pops_features_pathway_naive_FUMA_compatible.tar.gz - This contains the data to recreate pathway naive PoPS scores as used in the manuscript ENSEMBL version 1.03-1.10, or FUMA MAGMA results.NOTE: This will allow for running PoPS on FUMA-generated MAGMA results, but will result in a PoPS score of 0 for genes not included in the original PoPS study. 

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    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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    influence
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    impulse
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average