Processed Nome-Seq Data For Four Human Cell Lines

Name: Processed Nome-Seq Data For Four Human Cell Lines
Creator: Statham, Aaron Luke
Keywords: Nucleosome Occupancy, DNA methylation, NOMe-seq

Statham, Aaron Luke

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Dataset . 2014

License: CC BY

Data sources: Datacite

Processed Nome-Seq Data For Four Human Cell Lines

Research datakeyboard_double_arrow_right Dataset 29 Oct 2014Publisher:ZenodoFunded by:NHMRC | BEYOND TRADITIONAL GENE B..., NIH | MECHANISMS OF DE NOVO MET..., NHMRC | Modelling epigenomic chan...

Authors: Statham, Aaron Luke;

doi: 10.5281/zenodo.12454

Processed Nome-Seq Data For Four Human Cell Lines

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Abstract

Raw NOME-seq data (Gene Expression Omnibus accession GSE57498) for the human cell lines HMEC, MCF7, PrEC, PC3 were aligned to hg19 using bwa-meth. Methylation and occupancy calls were made at WCG and GCH sites respectively using bwa-meth, BisSNP and bespoke, tailor made scripts (https://github.com/astatham/NOMe-seq-analysis).

Related Organizations

Garvan Institute of Medical Research
Australia

Keywords

Nucleosome Occupancy, DNA methylation, NOMe-seq

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