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ropensci/RNeXML: RNeXML v2.2.0

Authors: Carl Boettiger; Rutger Vos; Hilmar Lapp; Scott Chamberlain; Kseniia Shumelchyk; Craig Citro; steven2249; +4 Authors

ropensci/RNeXML: RNeXML v2.2.0

Abstract

An extensive and rapidly growing collection of richly annotated phylogenetics data is now available in the NeXML format. NeXML relies on state-of-the-art data exchange technology to provide a format that can be both validated and extended, providing a data quality assurance and adaptability to the future that is lacking in other formats. See Vos et al 2012 for further details on the NeXML format. Release Notes Fixes various (previously broken) aspects of handling polymorphic and uncertain states for discrete (non-molecular) and continuous characters, including obtaining a character matrix (#174), ensuring proper column types (#188), and serializing to NeXML (#192). Adds the optional ability to, in addition to the character matrix, obtain a concordantly formatted matrix of state types (standard, polymorphic, uncertain). Fixes loss of certain literal-valued metadata when serializing to NeXML. #193 Drops package phylobase as dependency. (Also removes circular dependency chain, because phylobase depends on RNeXML.)

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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
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influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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