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Software . 2018
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Software . 2018
License: http://www.gnu.org/licenses/old-licenses/gpl-2.0-standalone.html
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ZENODO
Software . 2018
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RNA-seq Quantification of Alternative Polyadenylation (QAPA)

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 25 Jan 2018Publisher:Zenodo
Authors: Kevin C. H. Ha; Benjamin J. Blencowe; Quaid Morris;
Code repository: https://github.com/morrislab/qapa

doi: 10.5281/zenodo.1160479 , 10.5281/zenodo.1222196 , 10.5281/zenodo.1160480

RNA-seq Quantification of Alternative Polyadenylation (QAPA)

Abstract

RNA-seq Quantification of Alternative Polyadenylation (QAPA) Analysis of alternative polyadenylation (APA) from RNA-seq data (human and mouse). QAPA consists of two main components: Extraction and annotation of 3' UTR sequences from gene models Calculation of relative usage of alternative 3' UTR isoforms based on transcript-level abundance ---- Pre-compiled 3' UTR libraries for human (hg19) and mouse (mm10) are also provided.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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