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Dataset . 2018
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2018
License: CC BY
Data sources: Datacite
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ZENODO
Dataset . 2018
License: CC BY
Data sources: ZENODO
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KNAW Pure
Dataset
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Draft Genomes Of Vinasse Bacteria

Authors: Cassman, N.; Lourenço, Késia S.; Braga do Carmo, Janaina; Cantarella, Heitor; Kuramae, E.E.;

Draft Genomes Of Vinasse Bacteria

Abstract

Twenty-one draft bacterial genomes and their annotations described in the publication Cassman, NA. et. al. 2018, Biotech for Biofuels. The goal of the study was to characterize the microbial assemblage present in sugarcane vinasse, which is the major waste of bioethanol production from sugarcane and generally used as an organic and/or K fertilizer. Briefly, the draft genomes were binned (maxbin2) and manually refined (anvi'o v.2.3.2) from a cross-assembly (metaSPADES v3.8.2) of 18 metagenomes sequenced from six batches of sugarcane vinasse with Illumina Miseq technology. Annotations (prokka v1.12) were carried out against prokka databases (UniProtKB Bacterial and the HAMAP HMM database) along with the dbCAN HMM database (dbCAN-fam-HMMs.v6). The uploaded files are from 1) prokka output: bin nucleotide sequences (fa), protein sequences (faa), annotations (gff and tsv) and annotation info (txt) and 2) anvi'o output: percent recruitment of the bins, bin summary and samples summary.

Funding sources: The Netherlands Organization for Scientific Research (NWO-729.004.003) Sao Paulo State foundation (FAPESP-2013/50365-5, FAPESP BEPE-2014/24141-5, FAPESP-2013/12716-0)

Country
Netherlands
Keywords

draft genome, bacterial genome, sugarcane, metagenome assembled genome, Verwerkte data, Processed data, vinasse, fermentation

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
views
OpenAIRE UsageCountsViews provided by UsageCounts
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1
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162