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jefferis/rcatmaid: catmaid R package v0.7

Authors: Gregory Jefferis; Zhihao Zheng; Marta Costa;

jefferis/rcatmaid: catmaid R package v0.7

Abstract

catmaid 0.7 This is a substantial release with many new functions/enhancements, changes to match the API defined by the 2016.10.18 CATMAID release, support for token-based authentication and numerous bug fixes. support for CATMAID token-based authentication (#35) Add catmaid_get_connectors_between to return connections between (multiple) pre and postsynaptic partners - thanks to Zhihao Zheng (#53, #56) Add function to parse CATMAID urls e.g. to extract xyz position (#55) Add rename_neuron function (#54) Add catmaid_version function (#58) Add catmaid_user_history function (#57) Add catmaid_get_annotations_for_skeletons function (#38) Add catmaid_remove_annotations_for_skeletons function (#43) Add catmaid_add_volume to add 3D meshes to catmaid (#69) catmaid_get_connector_table can now accept multi skid specifications (#49) catmaid_get_connectors_between returns more informative errors (#51) fix "No encoding supplied: defaulting to UTF-8." warning (#59) stop catmaid_skids returning duplicates when there are multiple matching annotations (#44) ensure that connectors are also scaled when xforming neurons (#47) catmaid_query_by_annotation returns neuron column as character vector (#46) catmaid_get_connector_table returns partner_skid columns as an integer (#48) fix bug in url for catmaid_get_review_status function (#45) Give sensible name to 1st column of connector data.frame (#42) ensure neurons without connectors scale properly (#41) fix bug in catmaid_connection_setenv() when some elements are null (#50) catmaid_get_annotations_for_skeletons - fix bug in skid order (#39) ensure catmaid_get_contributor_stats passes on connection (#37) ensure all functions pass on connection to catmaid_fetch (#60) connectors.neuronlist should handle neurons without connectors (#29) catmaid_skids should pass on pid (#64) fix catmaid_get_connector_table to reflect 2016.09.01-65 API change (#65) fix bug in catmaid_user_history with small queries (#70)

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