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HegemanLab/w4mkmeans_galaxy_wrapper: w4mkmeans - A K-means cluster tool for W4m

Authors: Arthur Eschenlauer;

HegemanLab/w4mkmeans_galaxy_wrapper: w4mkmeans - A K-means cluster tool for W4m

Abstract

w4mkmeans is a Planemo-built galaxy-tool-wrapper to wrap the stats::kmeans R package for clustering the dataMatrix produced by workflow4metabolomics (W4m). Using the intensities in the dataMatrix, w4mkmeans calculates the k-means clusters for samples or features and add them as columns to sampleMetadata or featureMetadata, respectively. If several, comma-separated K's are supplied, then one column is added for each K. This clustering is not hierarchical; each member of a cluster is not a member of any other cluster. For feature-clustering, each feature is assigned to a cluster such that the feature's response for all samples is closer to the mean of all features for that cluster than to the mean for any other cluster. For sample-clustering, each sample is assigned to a cluster such that the sample's response for all features is closer to the mean of all samples for that cluster than to the mean for any other cluster.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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