Historical NCI Genomic Data Commons data (v09-14-2017). Clinical ('phenotype') and gene expression (HTSeq FPKM-UQ). TCGA-COAD.GDC_phenotype.tsv dataset: phenotype - Phenotype cohortGDC TCGA Colon Cancer (COAD) dataset IDTCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv downloadhttps://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.GDC_phenotype.tsv.gz; Full metadata samples570 version11-27-2017 hubhttps://gdc.xenahubs.net type of dataphenotype authorGenomic Data Commons raw datahttps://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-90 raw datahttps://api.gdc.cancer.gov/data/ input data formatROWs (samples) x COLUMNs (identifiers) (i.e. clinicalMatrix) 570 samples X 151 identifiersAll IdentifiersAll Samples TCGA-COAD.htseq_fpkm-uq.tsv dataset: gene expression RNAseq - HTSeq - FPKM-UQ cohortGDC TCGA Colon Cancer (COAD) dataset IDTCGA-COAD/Xena_Matrices/TCGA-COAD.htseq_fpkm-uq.tsv downloadhttps://gdc.xenahubs.net/download/TCGA-COAD/Xena_Matrices/TCGA-COAD.htseq_fpkm-uq.tsv.gz; Full metadata samples512 version09-14-2017 hubhttps://gdc.xenahubs.net type of datagene expression RNAseq unitlog2(fpkm-uq+1) platformIllumina ID/Gene Mappinghttps://gdc.xenahubs.net/download/probeMaps/gencode.v22.annotation.gene.probeMap.gz; Full metadata authorGenomic Data Commons raw datahttps://docs.gdc.cancer.gov/Data/Release_Notes/Data_Release_Notes/#data-release-80 raw datahttps://api.gdc.cancer.gov/data/ wranglingData from the same sample but from different vials/portions/analytes/aliquotes is averaged; data from different samples is combined into genomicMatrix; all data is then log2(x+1) transformed. input data formatROWs (identifiers) x COLUMNs (samples) (i.e. genomicMatrix) 60,484 identifiers X 512 samples