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License: CC BY
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Other ORP type . 2018
License: CC BY
Data sources: Datacite
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Mantis: A Fast, Small, And Exact Large-Scale Sequence-Search Index - Experiment List

Authors: Pandey, Prashant; Almodaresi, Fatemeh; Bender, Michael A.; Ferdman, Michael; Johnson, Rob; Patro, Rob;

Mantis: A Fast, Small, And Exact Large-Scale Sequence-Search Index - Experiment List

Abstract

This package contains three files describing the datasets used in all experiments done in Mantis paper. The experiment_cutoff file lists all the experiment accession numbers and the k-mer count cutoffs used to filter each experiment, which is based on the same conditions as in the SSBT paper (explained in detail in the paper). The url file contains all the urls to the parent directory of the fastq files for the paired-end or single-end reads indexed in the experiments. The valid experiments file lists all 2586 experiments out of the original 2652 that passed our "validity" criteria and were used in the experiments in the paper (further details explained in the paper).

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Keywords

Human RNA short read sequencing experiments, brain tissue, breast tissue, computational biology, blood tissue, sequence search, mantis

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selected citations
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This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
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popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
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