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Silva Taxonomic Training Data Formatted For Dada2 (Silva Version 132)

Name: Silva Taxonomic Training Data Formatted For Dada2 (Silva Version 132)
Creator: Callahan, Benjamin
Keywords: taxonomy, DADA2, Silva

Research datakeyboard_double_arrow_right Dataset 13 Feb 2018Publisher:Zenodo

Authors: Callahan, Benjamin;

doi: 10.5281/zenodo.1172783 , 10.5281/zenodo.1172782

Silva Taxonomic Training Data Formatted For Dada2 (Silva Version 132)

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Abstract

These DADA2-formatted training fasta files were derived from the Silva Project's version 132 release. They are available under the Silva dual-licensing model for academia and commercial users: https://www.arb-silva.de/silva-license-information/ These fastas were generated by the following commands (using the dada2 R package version 1.7.6): path <- "~/Desktop/Silva/Silva.nr_v132" dada2:::makeTaxonomyFasta_Silva(file.path(path, "silva.nr_v132.align"), file.path(path, "silva.nr_v132.tax"), "~/tax/silva_nr_v132_train_set.fa.gz") dada2:::makeSpeciesFasta_Silva("~/Desktop/Silva/SILVA_132_SSURef_tax_silva.fasta.gz", "~/tax/silva_species_assignment_v132.fa.gz")

Related Organizations

Urgench State University
Uzbekistan

Keywords

taxonomy, DADA2, Silva

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