Canine duodenum scRNA-seq atlas This release adds the processed data to ensure the data are accessible. The relevant manuscript is, "Single cell transcriptomic analysis of the canine duodenum in chronic inflammatory enteropathy and health." File descriptions AllCells_duod_annotated.rds - Seurat object (version 4.3.0) of the full dataset used in generation of Figure 2. with annotations stored in the `celltype.l1` and `celltype.l2` metadata slots. Myeloid_duod_annotated.rds - Seurat object (version 4.3.0) of the myeloid cell subset used in generation of Figure 3. Annotations tored in the `celltype.l1` and `celltype.l2` metadata slots. Tcell_duod_annotated.rds - Seurat object (version 4.3.0) of the T cell subset used in generation of Figure 4d. Annotations tored in the `celltype.l1` and `celltype.l2` metadata slots. Epithelial_duod_annotated.rds - Seurat object (version 4.3.0) of the epithelial cell subset used in generation of Figure 5. Annotations tored in the `celltype.l1` and `celltype.l2` metadata slots. Additional resources NCBI GEO: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE254005 Interactive cell browser: https://canine-duodenum-cie.cells.ucsc.edu GitHub page: https://github.com/dyammons/canine_duodenal_atlas Key words: canine, duodenum, scRNA-seq, transcriptomics, chronic enteropathy, canine (dog)