Figure 2. Phylogenies of the Corypha africana–C. sharpii–C. hypermetra–C. somalica–C. ashi complex, with Corypha fasciolata as the outgroup (the more distant outgroup species Amirafra rufocinnamomea has been removed) based on the multi-species coalescent, produced within a Bayesian framework in SNAPP on 16,412 single nucleotide polymorphisms (SNPs) and single individuals per taxon (A) and with ASTRAL, summarising taxon quartets in maximum likelihood (ML) analyses of 32,000 SNPs across 626 unlinked windows for all samples (B). Node support values are posterior probabilities (PPs) for SNAPP and local PPs for ASTRAL, with an asterisk indicating a PP of 1.00. Clades that are discussed in the text are labelled I–VIII and with the name of the taxon that has priority in the respective clade. The names of C. africana s.l. are in black font; the other species are in other colours. Topological incongruence between these two trees, the Snapper species tree (Supporting Information, Fig. S3), the ML IQ-TREE tree (Supporting Information, Fig. S5) and/or the Bayesian multilocus tree (Fig. 3) are indicated by a red '#'.

Published as part of Alström, Per, Mohammadi, Zeinolabedin, Donald, Paul F., Nymark, Marianne, Enbody, Erik D., Irestedt, Martin, Elisha, Emmanuel Barde, Ndithia, Henry K., Tieleman, B. Irene, Engelbrecht, Derek, Olsson, Urban, Rancilhac, Loïs & Stervander, Martin, 2024, Integrative taxonomy reveals unrecognised species diversity in African Corypha larks (Aves: Alaudidae), pp. 1080-1108 in Zoological Journal of the Linnean Society 200 (4) on page 1090, DOI: 10.1093/zoolinnean/zlad107, http://zenodo.org/record/11240858