Code and R data files for publication: "Investigating the basis of lineage decisions and developmental trajectories in the dorsal spinal cord through pseudotime analyses" Development, 2024. RDS are processed data files subRA.rds is just RA protocol generated in object creation - individual datasets.R subBMP.rds is just BMP protocol generated in object creation - individual datasets.R with pseudotime updated.rds is RA and BMP combined with pseudotime analysis added generated in Data loading and integration.R and then monocle.R and then analyzed mainly in object analysis.R but also in other files briscoe.sub.intergrated is dataset from delile et al generated in briscoe analysis.R integration with our dataset.R is briscoe dataset and our two datasets combined with further analysis in knn UMAP analysis.R each shiny data rds file goes with its respective app.R file these rds files have more genes than could be uploaded to the online shiny app Relevant citations for code available in linked publication