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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Nanosecond chain dynamics of single-stranded nucleic acids

Authors: Nüesch, Mark F.; Pietrek, Lisa M.; Holmstrom, Erik D.; Nettels, Daniel; von Roten, Valentin; Kronenberg-Tenga, Rafael; Medalia, Ohad; +2 Authors

Nanosecond chain dynamics of single-stranded nucleic acids

Abstract

fragment_library.tar.gz: Fragment libraries used as input to grow dTab19, dA19, dC19, and dT19 with HCG. All folders contain the topology as pdb file and the processed 100 ns trajectory as xtc file without water molecules, and the mdp file used to run the library at 300 K. Please note that we performed temperature replica exchange to create the fragment library as described in the publication. We also provide custom force field parameters for the fragment with the abasic site. HCG_models.tar.gz: rA19, rC19, rU19, dTab19, dA19, dC19, and dT19 with attached FRET fluorophores Alexa 594 and Alexa 488. For each model we provide a topology file as pdb and a xtc trajectory with 10000 frames. Distributions.xlsx: columns - A = dye-distance in nm, B = weights from refinement. BioEnMeanVarianceOneSigma.tgz: Fortran code to perform the BioEn reweighting; input, output files and csh script to run the code, and a README file describing the input and output. 

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average