Features: metrics on each contig are now calculated and output to a file (by default, transrate_contigs.csv) output files can have a custom prefix with the --outfile argument Improvements: all inline C methods replaced with extension C (cleaner code, only compiles once on install) linguistic complexity now calculated in C (400x speedup) support new CRB-BLAST feature that splits BLAST query into one chunk per core (faster than threaded BLAST in most cases) check dependencies at every run and give instructions for installing them if missing Bug fixes: remove redundant express dependency fix parsing of samtools mpileup output so contig names are now matched up fix bug where null characters in contigs weren't handled (wtf are null characters doing in contigs, Trinity?) handle all bases that aren't ACTG by considering them to be Ns