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Other literature type . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Data Paper . 2024
License: CC BY
Data sources: Datacite
ZENODO
Data Paper . 2024
License: CC BY
Data sources: Datacite
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Supporting data and code for: Design of intrinsically disordered protein variants with diverse structural properties

Authors: Pesce, Francesco;

Supporting data and code for: Design of intrinsically disordered protein variants with diverse structural properties

Abstract

Supporting data and code for: Pesce, F., Bremer, A., Tesei, G., Hopkins, J. B., Grace, C. R., Mittag, T., & Lindorff-Larsen, K. (2023). Design of intrinsically disordered protein variants with diverse structural properties. bioRxiv. Molecular dynamics simulations are available on ERDA. List of content: CODE: Python code to reproduce simulations (single- and multi-chain) and run the design algorithm (using Rg or contact maps as structural targets). EVOLUTION_DATA: Data produced by running the design algorithm. NMR: Raw PFG-NMR measurements of A1-LCD and V1 at 34°C. SAXS: Solvent subtracted and averaged SEC-SAXS measurements of A1-LCD and V2–V5. 120centroids_data.pkl: Sequences, Rg and sequence features of 120 representative A1-LCD swap variants generated by designing more compact variants. Figures.ipynb: Jupyter notebook to reproduce the figures in the main text of the paper. IDPDesigner.ipynb: Google Colab notebook to design IDP sequences with a specific scaling exponent. V1-5_WT_csat.xlsx: Measured saturation concentration values for A1-LCD and V1–V5. exp_sequences.fasta: Sequences of A1-LCD and V1–V5 experimentally characterized. no_expression_sequences.fasta: Sequences of swap variants of A1-LCD that did not express in E. coli.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average