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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Data and Analysis Files Repository: Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics

Research datakeyboard_double_arrow_right Dataset 15 Apr 2024Publisher:Zenodo
Authors: Cipurko, Denis;

doi: 10.5281/zenodo.10963424 , 10.5281/zenodo.10963423

Data and Analysis Files Repository: Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics

Abstract

Data and Analysis Files from "Repurposing Large-Format Microarrays for Scalable Spatial Transcriptomics" ArraySeq_Method.zip contains the following folder and contents: STARSolo: All code and count matrix output from fastq spatial barcode demultiplexing. Images: All resolution-downsampled H&E image scans from analyzed tissues Space_Ranger: All 10x Space Ranger output from Visium datasets generated in the paper. Analysis: All scripts for analyzing and plotting Array-seq and Visium datasets generated in this paper. Also contains output h5ad files. ArraySeq_Barcode_generation_n12.rmd: The script used to generate the Array-seq probes with 12-mer spatial barcodes. 

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
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