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ZENODO
Software . 2024
License: http://opensource.org/licenses/MIT
Data sources: ZENODO
ZENODO
Software . 2024
License: https://opensource.org/licenses/MIT
Data sources: Datacite
ZENODO
Software . 2024
License: https://opensource.org/licenses/MIT
Data sources: Datacite
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Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 13 Feb 2024Publisher:Zenodo
Authors: Domanskyi, Sergii; Srivastava, Anuj; Kaster, Jessica; Li, Haiyin; Herlyn, Meenhard; Rubinstein, Jill C.; Chuang, Jeffrey H.;

doi: 10.5281/zenodo.10839654 , 10.5281/zenodo.10839655

Nextflow Pipeline for Visium and H&E Data from Patient-Derived Xenograft Samples

Abstract

This record contains the Spatial Transcriptomics Quantification (STQ) pipeline for 10x Visium and H&E-stained whole slide images. The pipeline source code repository is hosted at https://github.com/TheJacksonLaboratory/STQ.

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average