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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2023
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2023
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Gene embeddings used in GenePT: A Simple But Hard-to-Beat Foundation Model for Genes and Cells Built From ChatGPT

Authors: Yiqun, Chen;

Gene embeddings used in GenePT: A Simple But Hard-to-Beat Foundation Model for Genes and Cells Built From ChatGPT

Abstract

These are the pulled NCBI (and UniProt, when applicable) summaries of genes, as well as the corresponding OpenAI text embeddings (text-embedding-ada-002 and text-embedding-3-large) computed on the summaries. See methods details in Chen and Zou (2024+). The unzipped folder contains four different files: NCBI_summary_of_genes.json (NCBI gene card summary of human genes) NCBI_UniProt_summary_of_genes.json (NCBI gene card and UniProt protein (when applicable) summary of human genes) GenePT_gene_embedding_ada_text.pickle (a dictionary of numpy array where gene names (upper case) are keys and text-embedding-ada-002 embeddings of the summary in 1. are the values) GenePT_gene_protein_embedding_model_3_text.pickle (a dictionary of numpy array where gene names (upper case) are keys and text-embedding-3-large embeddings of the summary in 1. are the values) Reference: Chen YT, Zou J. (2024+) GenePT: A Simple But Effective Foundation Model for Genes and Cells Built From ChatGPT. bioRxiv preprint: https://www.biorxiv.org/content/10.1101/2023.10.16.562533v1.

Related Organizations
Keywords

Foundation Models, Computational Biology

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average