# Genomic datasets associated to the publication: # Gene-ID conversion with previous genome version Texasv3_vs_Texasv2_GeneID.txt -- gene ID conversion between Texasv3 and Texasv2 (https://www.rosaceae.org/analysis/295) pdulcis26_to_F1_liftoff_polished.gff3 -- Texasv2 gene annotation liftoff on Phase-1 assembly (Phase-1 coordinates) # Phase-1 Texas_F1_K80_chr.fasta -- genome asssembly, phase-1 Texas_F1_gene_models.gff3 -- phase-1 gene annotation (de novo annotation)Functional_annotation_TexasF1.csv -- phase-1 gene functions Texas_F1_ref_SV.vcf --- Structural variations relative to phase-0 (This file uses Phase-1 as reference) # Phase-0 Texas_F0_K80_chr.fasta -- genome asssembly, phase-0 Texas_F0_gene_models.gff3 -- phase-0 gene annotation (liftoff from Phase-1)Functional_annotation_TexasF0.csv -- phase-0 gene functions Texas_F0_ref_SV.vcf --- Structural variations relative to phase-1 (This file uses Phase-0 as reference) # Transposable element annotation Texas_F0_HiConf_TE_v3.gff3 --- TE annotation in Phase-0Texas_F1_HiConf_TE_v3.gff3 --- TE annotation in Phase-1Texasv3_TElib.fa --- TE library of TexasV3 (non-redundant repeat consensuses taking the account the two genome phases)