Powered by OpenAIRE graph
Found an issue? Give us feedback
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/ ZENODOarrow_drop_down
image/svg+xml art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos Open Access logo, converted into svg, designed by PLoS. This version with transparent background. http://commons.wikimedia.org/wiki/File:Open_Access_logo_PLoS_white.svg art designer at PLoS, modified by Wikipedia users Nina, Beao, JakobVoss, and AnonMoos http://www.plos.org/
ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
versions View all 2 versions
addClaim

Generating high fidelity surface meshes of neocortical neurons using skin modifiers

Authors: Abdellah, Marwan; Favreau, Cyrille; Hernando, Juan; Lapere, Samuel; Schürmann, Felix;

Generating high fidelity surface meshes of neocortical neurons using skin modifiers

Abstract

Summary The dataset contained in this repository is the resulting meshes from applying the Skin Modifier in Blender on all neuronal morphological types (mtypes) identified for comastosensory cortical cells by the Blue Brain Project. The papser, Generating high fidelity surface meshes of neocortical neurons using skin modifiers, is published in the 2019 EG Computer Graphics & Visual Computing (CGVC) conference. https://doi.org/10.2312/cgvc.20191257https://diglib.eg.org:443/handle/10.2312/cgvc20191257 Paper abstract We present the results of exploring the capabilities of skinning modifiers to generate high fidelity polygonal surface meshes of neurons from their morphological skeletons that are segmented from optical microscopy slides. Our algorithm is implemented in Blender as an add-on relying on its standard Python API. The implementation is also integrated into an open source domain specific framework, NeuroMorphoVis, that is used to visualize and analyze neuronal morphologies available from the neuroscientific community. Our technique is applied to create meshes for a set of neurons with 55 different morphologies reconstructed from the neocortex of a 14-days-old rat. The generated meshes are used to visualize full compartmental simulations of neocortical activity for analysis purposes and also to create high quality scientific illustrations of in silico neuronal circuits for media production with physically-based path tracers. BibTex citation @inproceedings {10.2312:cgvc.20191257, booktitle = {Computer Graphics and Visual Computing (CGVC)}, editor = {Vidal, Franck P. and Tam, Gary K. L. and Roberts, Jonathan C.}, title = {{Generating High Fidelity Surface Meshes of Neocortical Neurons using Skin Modifiers}}, author = {Abdellah, Marwan and Favreau, Cyrille and Hernando, Juan and Lapere, Samuel and Schürmann, Felix}, year = {2019}, publisher = {The Eurographics Association}, ISBN = {978-3-03868-096-3}, DOI = {10.2312/cgvc.20191257} }

  • BIP!
    Impact byBIP!
    selected citations
    These citations are derived from selected sources.
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    0
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
Powered by OpenAIRE graph
Found an issue? Give us feedback
selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average