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EATRIS-Plus multi-omics data of a human reference cohort

Authors: 't Hoen, Peter-Bram; de Visser, Casper;

EATRIS-Plus multi-omics data of a human reference cohort

Abstract

In this reference study, blood samples of 127 healthy individuals were analyzed with a wide range of -omics technologies, resulting in the most comprehensive -omics profiling data set that is publicly available. The molecular measurements that are available here, can be used as reference values for any future (multi-)omics studyies. Along with phenotypic information (Sex, Age, BMI etc. and measured cell types levels) on the healthy subjects, the following data types are included: Targeted metabolomics (acylcarnitines, amino acids and very long chain fatty acids) Lipidomics (negative and positive ionization modes) Proteomics mRNA-seq miRNA-seq miRNA qRT-PCR Enzymation Methylation sequencing The pre-processed mult-omics data can be accessed here in the shape of a MultiAssayExperiment object (Ramos et al. 2017). Instructions on how to read the object into R can be found here: Read_MultiAssayExperiment. A similar object for Python (MuData) including the same data will be added later. DATA AVAILABILITY STATEMENT: Full data related to the EATRIS-Plus multiomic cohort are available in the ClinData repository (https://clindata.imtm.cz) and include full phenotypic information, physical and laboratory examinations, multiomic data from white blood cells (whole genome sequencing, enzymatic methylation DNA sequencing, mRNA sequencing, miRNA sequencing) or plasma (miRNA qPCR profiling, proteomics, targeted metabolomics, untargeted lipidomics, Raman spectroscopy profiling). However, access is restricted due to legal, ethical, scientific and/or commercial reasons. Access to the data is subject to approval and a data sharing transfer agreement. For data access please contact data.access@imtm.cz. 

Keywords

Proteomics, Epigenomics, Multi-omics, Lipidomics, Metabolomics, Genomics, Transcriptomics, EATRIS, Personalized medicine

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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