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ZENODO
Software . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Software . 2024
License: CC BY
Data sources: Datacite
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ArnovanHilten/GenNet: GenNet 2.0

Authors: Arno van Hilten; reneevdw; FedericoMelograna;

ArnovanHilten/GenNet: GenNet 2.0

Abstract

What's Changed GenNet interpret: adds the interpretation module with six interpretation methods get_weight_scores: uses the weights to calculate the importance of each feature and node DeepExplain: uses the gradient (see DeepExplain) to calculate the importance RLIPP: uses logistic regression with signals to and from the node to calculate a measure of non-linearity for all nodes NID: Finds interacting features based on the features with the strongest weights DFIM: perturbs each input (or N inputs in the order of importance), and tracks which other features change importance to find interacting features PathExplain: Uses the Expected Hessian to find interacting features bugfixes for converting plink2 files module for converting toplogy to npz matrices add one-hot encoding support adds multiple filters. LocallyDirected1D now supports multiple filters akin to channels or feature maps in CNNs

  • BIP!
    Impact byBIP!
    citations
    This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    1
    popularity
    This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
    Average
    influence
    This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
    Average
    impulse
    This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
    Average
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citations
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
1
Average
Average
Average