Codes for the watermelon pangenome project in 2023 01. Genome survey Codes for genome survey. 02. T2T Genome assembly and polishing Codes for de novo genome assembly and polishing. 03. Identification of centromere and telomere sequence Codes for identification of centromere and telomere sequence. 04. Genome evaluation Codes for genome evaluation. 05. Genome annotation Codes for genome annotation. 06. Organellar Genome Assembly and Annotation Codes for genome organellar genome assembly and annotation. 07. Phylogenetic tree analyses Codes for phylogenetic tree analyses. 08. Gene family identification and phylogenetic analysis Codes for gene family identification. 09. Structural variation identification Codes for structural variation identification. 10. A/B compartment identification Codes for A/B compartment identification. 11. GWAS analyses Codes for GWAS analyses. 12. Graph-based genome construction Codes for Graph-based genome construction. Citation Contacts yilinzhang@stu.pku.edu.cn (Yilin Zhang) huangmh@pku.edu.cn (Minghan Huang)