Views provided by UsageCountsIdentification of transcription factor co-binding patterns with non-negative matrix factorization
Rauluseviciute, Ieva; Launay, Timothée; Barzaghi, Guido; Nikumbh, Sarvesh; Lenhard, Boris; Krebs, Arnaud; Castro-Mondragon, Jaime A.; +1 Authors
Rauluseviciute, Ieva; Launay, Timothée; Barzaghi, Guido; Nikumbh, Sarvesh; Lenhard, Boris; Krebs, Arnaud; Castro-Mondragon, Jaime A.; Mathelier, Anthony;
Identification of transcription factor co-binding patterns with non-negative matrix factorization
This repository contains pre-processed data required to reproduce the results of the paper "Identification of transcription factor co-binding patterns with non-negative matrix factorization". The repository with the code can be found here: https://bitbucket.org/CBGR/cobind_manuscript/src/master/. Data include transcription factor binding sites (TFBSs) for 7 species from UniBind 2021 database, joined motif collection from CIS-BP and JASPAR 2022 databases and corresponding physical protein-protein interaction (PPI) data from STRING database.
- MRC London Institute of Medical Sciences United Kingdom
UniBind, transcription factor binding sites, COBIND, co-binding
UniBind, transcription factor binding sites, COBIND, co-binding
selected citations These citations are derived from selected sources.This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).0 popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.Average influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).Average impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.Average views 23 - 23views
selected citations
Citations provided by BIP!
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Citations provided by BIP!popularityPopularity provided by BIP!
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
Popularity provided by BIP!influenceInfluence provided by BIP!
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
Influence provided by BIP!impulseImpulse provided by BIP!
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
Impulse provided by BIP!viewsViews provided by UsageCounts
Views provided by UsageCounts 0
Average
Average
Average
23