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ZENODO
Dataset . 2024
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2024
License: CC BY
Data sources: Datacite
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Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling

Authors: Abdellah, Marwan;

Synthesis of geometrically realistic and watertight neuronal ultrastructure manifolds for in silico modeling

Abstract

This dataset contains a list of watertight manifolds and their corresponding tetrahedral volumetric meshes (.ele, .node) for a set of neuronal morphologies with diverse morphological types. The morphologies used in this study can be made available upon a reasonable request. The watertight manifolds are created with the Voxelization mesher in NeuroMorphoVis (Abdellah et al., 2018) as a new method to convert abstract representations of neuronal morphologies into realistic mesh models that can be used to perform reaction-diffusion simulations. The spiny morphologies are synthesized using a digitally constructed circuit from the Blue Brain Project (Markram et al., 2015). Spine geometries are segmented from an EM stack of a cortical tissue of a P14 rat (Coggan et al, 2018). Users can test the implementation using public morphology databases, such as NeuroMorpho.Org or ModelDB. For visual analytics purposes, some meshes are exported into .vtk format, which can be visualized in Paraview. Users can also use Blender to visualize the .stl files. 

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average