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ZENODO
Software . 2024
License: http://opensource.org/licenses/BSD-3-Clause
Data sources: ZENODO
ZENODO
Software . 2024
License: https://opensource.org/licenses/BSD-3-Clause
Data sources: Datacite
ZENODO
Software . 2024
License: https://opensource.org/licenses/BSD-3-Clause
Data sources: Datacite
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Source code for HATCHet2 related to publication "HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data"

HATCHet2 publication source code
integration_instructionsResearch softwarekeyboard_double_arrow_right Software 11 Jan 2024Publisher:Zenodo
Authors: Myers, Matthew; Arnold, Brian; Bansal, Vineet; ZACCARIA, SIMONE; Raphael, Benjamin J.;

doi: 10.5281/zenodo.10493259 , 10.5281/zenodo.10493258

Source code for HATCHet2 related to publication "HATCHet2: clone- and haplotype-specific copy number inference from bulk tumor sequencing data"

Abstract

Source code for method HATCHet2 which infers copy-number variations form multiple bulk sequencing samples. Zip file "hatchet-2.0.0" contains the source code used to generate results for the initial submission and bioRxiv preprint. Zip file "revisions" contains the source code used to generate updated results for the 10x dataset, multi-sample MASCoTE simulated data, single-sample MASCoTE simulated data, and new simulations. See HATCHet repository for the current version of the software and documentation: https://github.com/raphael-group/hatchet See the HATCHet2 publication repository for the most recent version of all results and parameter settings: https://github.com/raphael-group/hatchet2-paper/

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average
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