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GTax

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 30 Nov 2023 English Publisher:Zenodo

Authors: Vera Alvarez, Roberto; Landsman, David;

doi: 10.5281/zenodo.10234758 , 10.5281/zenodo.10234757

GTax

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Abstract

GTax python package provides tools for the creation of the GTax sequence-based database. This database includes one assembly per organism deposited in the NCBI Genomes database. The sequences are organized by 19 taxonomic levels from superkindom to clades. Python pickle files are also provided with a graph data structure for the taxonomic tree. GitHub: https://github.com/ncbi/gtax Doc: https://gtax.readthedocs.io/en/latest/

Related Organizations

National Center for Biotechnology Information
United States
United States National Library of Medicine
United States

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