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Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts

Name: Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts
Creator: Tomuro, Kotaro

integration_instructionsResearch softwarekeyboard_double_arrow_right Software 16 Jul 2024Publisher:Zenodo

Authors: Tomuro, Kotaro;

doi: 10.5281/zenodo.10223916 , 10.5281/zenodo.10223917

Calibrated ribosome profiling assesses the dynamics of ribosomal flux on transcripts

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Abstract

1. System RequirementsSoftware Dependencies and Operating SystemsThe version of our systems to run “DESeq2_Calibration.R” is this.・language R ・version.string R version 4.3.0 (2023-04-21)The datasets are available on “GSE233555” in the National Center for Biotechnology Information (NCBI) database. 2. Installation GuideTo install R, follow the instructions on the official website: https://www.r-project.org/ 3. Instructions to Run on Data1. Open the R script (e.g., DESeq2_Calibration.R) in an R environment.2. Execute the script by clicking Run. 4.Expected Output* The csv file of number of ribosomes on each transcript. 5.Expected Run Time for Demo* The code is expected to run for approximately 1 minutes on a "normal" desktop computer.

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