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This PR contains a particularly important fix in https://github.com/nf-core/differentialabundance/pull/20, which resolves a long-standing issue in proper usage of abundance values from the rnaseq workflow. Users can now take the lengths from that workflow (using rnaseq >=v3.13.2) and pass them to this workflow to account for transcript length biases across samples. What's Changed Post 1.3.1 release changes by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/186 Fix sample metadata table in the html report not paginating by @davidecarlson in https://github.com/nf-core/differentialabundance/pull/195 Fix GSEA indent in report by @WackerO in https://github.com/nf-core/differentialabundance/pull/190 Add optional scree plot to report by @WackerO in https://github.com/nf-core/differentialabundance/pull/192 Enable all genes for exploratory by @WackerO in https://github.com/nf-core/differentialabundance/pull/188 Add DESeq text to report by @WackerO in https://github.com/nf-core/differentialabundance/pull/193 Added colors to volcano by @WackerO in https://github.com/nf-core/differentialabundance/pull/194 Document correct RNAseq matrix usage by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/200 Update DESeq2/Limma by @WackerO in https://github.com/nf-core/differentialabundance/pull/201 Add design to report by @WackerO in https://github.com/nf-core/differentialabundance/pull/189 Transcript lengths for DESeq2 by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/203 Release v1.4.0 by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/204 V1.4.0 fixes by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/206 Dev -> master for v1.4.0 by @pinin4fjords in https://github.com/nf-core/differentialabundance/pull/205 New Contributors @davidecarlson made their first contribution in https://github.com/nf-core/differentialabundance/pull/195 Full Changelog: https://github.com/nf-core/differentialabundance/compare/1.3.1...1.4.0
citations This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | 3 | |
popularity This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network. | Top 10% | |
influence This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically). | Average | |
impulse This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network. | Average |