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Conference object . 2023
License: CC BY
Data sources: ZENODO
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Conference object . 2023
License: CC BY
Data sources: Datacite
ZENODO
Conference object . 2023
License: CC BY
Data sources: Datacite
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Team BIT.UA @ BC8 SympTEMIST Track: A Two-Step Pipeline for Discovering and Normalizing Clinical Symptoms in Spanish.

Authors: Jonker, Richard A. A.; Almeida, Tiago; Matos, Sergio; Almeida, João;

Team BIT.UA @ BC8 SympTEMIST Track: A Two-Step Pipeline for Discovering and Normalizing Clinical Symptoms in Spanish.

Abstract

Abstract This paper presents the participation of the Biomedical Informatics and Technologies group (BIT) from the University of Aveiro in the SYMPTEMIST task at BioCreative VIII, with a primary focus on biomedical entity recognition and normalization tasks. We leverage a transformer-based solution with MCRF for entity recognition and hybrid semantic search approach for the normalization. Both our methods achieved top-performing scores, especially, our best entity recognition submission achieved 0.7369 F1 (3.69 points above median), while our best submission for normalization achieved 0.5890 (5.90 points above median). Code to reproduce our submissions is available at https://github.com/ieeta-pt/BC8-SympTEMIST. This article is part of the Proceedings of the BioCreative VIII Challenge and Workshop: Curation and Evaluation in the era of Generative Models.

Related Organizations
Keywords

ner, symptoms, entity linking, bionlp

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average