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ZENODO
Dataset . 2015
License: CC BY
Data sources: ZENODO
ZENODO
Dataset . 2015
License: CC BY
Data sources: Datacite
ZENODO
Dataset . 2015
License: CC BY
Data sources: Datacite
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Gene coexpression data in ALCOdb

Authors: Aoki, Yuichi; Obayashi, Takeshi;

Gene coexpression data in ALCOdb

Abstract

Coexpression data provided in ALCOdb. Details of the data can be found on the download page in ALCOdb. http://alcodb.jp/coexpression/download Coexpression data Cre.v15-08.G15519-S172.quantile.mrgeo.d.zip Cre.v15-02.G15540-S180.qnorm.mrgeo.d.zip Cre.v13-10.G18773-S137.qnorm.mrgeo.d.zip Cme1.v14-06.G4586-S75.d.zip Cme2.v14-06.G6506-S48.d.zip Gene expression table to calculate the coexpression data Cre-R1-15-08_GeneExpressionTable.tsv.gz Cme1_GeneExpressionTable.tsv.zip Cme2_GeneExpressionTable.tsv.zip Codon usage similarity for evaluation Cre_v55.CodonUsage.G17741.zip Data Format Gene coexpression data folder contains a number of files, and file names correspond to the query gene IDs. Each file includes the coexpressed gene list as in the following format (Example about Cre01g001400 in cre.v15-08.G15519-S172.quantile.mrgeo.d). File Name: Cre01g001400 Line1: Cre03g197300 1.00 0.8352 Line2: Cre13g605200 6.63 0.6938 Line3: Cre09g411751 7.35 0.7082 Line4: Cre15g638551 9.38 0.7128 Line5: Cre01g037600 10.25 0.6761 Columns are tab-deliminated. Lines are sorted by column2. Column1: ID of coexpressed gene. Column2: Matual Rank (MR). [smaller MR indicates stronger coexpression] Column3: Pearson's Correlation Coefficient (PCC). [larger PCC indicates stronger coexpression]

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selected citations
These citations are derived from selected sources.
This is an alternative to the "Influence" indicator, which also reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Citations provided by BIP!
popularity
This indicator reflects the "current" impact/attention (the "hype") of an article in the research community at large, based on the underlying citation network.
BIP!Popularity provided by BIP!
influence
This indicator reflects the overall/total impact of an article in the research community at large, based on the underlying citation network (diachronically).
BIP!Influence provided by BIP!
impulse
This indicator reflects the initial momentum of an article directly after its publication, based on the underlying citation network.
BIP!Impulse provided by BIP!
0
Average
Average
Average